Lehodey P., Senina I., Wibawa T. A., Titaud O., Calmettes B., Tranchant B., and P. Gaspar (2017). Operational modelling of bigeye tuna (Thunnus obesus) spatial dynamics in the Indonesian region. Marine Pollution Bulletin. https://doi.org/10.1016/j.marpolbul.2017.08.020 

Dragon A-C., Senina, Hintzen N.T., Lehodey P., (2017). Modelling South Pacific Jack Mackerel spatial population dynamics and fisheries. Fisheries Oceanography. http://onlinelibrary.wiley.com/doi/10.1111/fog.12234/full  

Dragon AC, Senina I., Conchon A., Titaud O., Arrizabalaga H. and Lehodey P. (2015). Modeling spatial population dynamics of North Atlantic Albacore tuna under the influence of both fishing and climate variability.  Canadian Journal of Fisheries and Aquatic Sciences. 72: 1–15  http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2014-0338 

Lehodey, P., Conchon, A., Senina, I., Domokos, R., Calmettes, B., Jouanno, J., Hernandez, O., and Kloser, R. (2015) Optimization of a micronekton model with acoustic data. – ICES Journal of Marine Science, 72(5): 1399-1412. https://academic.oup.com/icesjms/article/72/5/1399/765328  

Senina I., M. Borderies, P. Lehodey. 2015. A spatio-temporal model of tuna population dynamics and its sensitivity to the environmental forcing data. Applied Discrete Mathematics And Heuristic Algorithms, Online journal of Samara State University, 1, 3, pp. 5-20.

Lehodey P., Senina I., Nicol S., Hampton J. (2014). Modelling the impact of climate change on South Pacific albacore tuna. Deep Sea Research, 113: 246–259. http://www.sciencedirect.com/science/article/pii/S0967064514003051 

Lehodey P., I. Senina, A-C. Dragon, and H. Arrizabalaga. 2014. Spatially explicit estimates of stock size, structure and biomass of North Atlantic albacore Tuna (Thunnus alalunga). ESSD Special Issue: EURO-BASIN data compilations for an integrated analysis of living resources in the North Atlantic Ocean. Accepted to publication August 2014, MS No.: essd-2014-6.

Sibert J, Senina I, Lehodey P, Hampton J (2012). Shifting from marine reserves to maritime zoning for conservation of Pacific bigeye tuna (Thunnus obesus). US Proceedings of the National Academy of Sciences. DOI/10.1073/pnas.1209468109 http://www.pnas.org/content/109/44/18221.full  

Hernandez O., Lehodey P., Senina I., Echevin V., Ayon P., Bertrand A., Gaspar P., (2014). Understanding mechanisms that control fish spawning and larval recruitment: Parameter optimization of an Eulerian model (SEAPODYM-SP) with Peruvian anchovy and sardine eggs and larvae data. Progress in Oceanography 123, 105-122. http://www.sciencedirect.com/science/article/pii/S0079661114000275  

Abecassis M, Senina I, Lehodey P, Gaspar P, Parker D, Balazs G.,Polovina J., (2013). A Model of Loggerhead Sea Turtle (Caretta caretta) Habitat and Movement in the Oceanic North Pacific. PLoS ONE 8(9): e73274. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0073274 

Bell JD, Ganachaud A., Gehrke PC, Griffiths SP, Hobday AJ, Hoegh-Guldberg O, Johnson, JE Le Borgne R, Lehodey P, Lough JM, Matear RJ, Pickering TD, Pratchett MS, Sen Gupta A, Senina I and Waycott M., (2013) Tropical Pacific fisheries and aquaculture will respond differently to climate change. Nature Climate Change, 3: 591–599. http://www.stewartcalculus.com/data/BIOCALCULUS/BB/BB_Chapter9/E9.4.2/nclimate1838.pdf  

Lehodey P., Senina I., Calmettes B, Hampton J, Nicol S. (2013). Modelling the impact of climate change on Pacific skipjack tuna population and fisheries. Climatic Change, 119(1): 95-109. https://link.springer.com/article/10.1007/s10584-012-0595-1  

Senina, I., Royer, F., Lehodey, P., Hampton, J., Nicol, S., Ogura, M., Kiyofuji, H and J. Sibert. 2012. Integrating conventional and electronic tagging data into SEAPODYM. Pelagic Fisheries Research Program of University of Hawaii at Manoa Newsletter, V. 16, No 1

Patrick Lehodey, John Hampton, Rich W Brill, Simon Nicol, Inna Senina, Beatriz Calmettes, Hans O Pörtner, Laurent Bopp, Tatiana Ilyina, Johann D Bell and John Sibert. Vulnerability of oceanic fisheries in the tropical Pacific to climate change. Chapter 8 in “Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. SPC, 2011. pp 463-493.

Lehodey P., Senina I., Sibert J., Bopp L, Calmettes B., Hampton J., Murtugudde R. (2010). Preliminary forecasts of population trends for Pacific bigeye tuna under the A2 IPCC scenario. Progress in Oceanography. 86: 302–315 http://www.sciencedirect.com/science/article/pii/S0079661110000558  

Lehodey P., Murtugudde R., Senina I. (2010). Bridging the gap from ocean models to population dynamics of large marine predators: a model of mid-trophic functional groups. Progress in Oceanography, 84: 69–84  http://www.sciencedirect.com/science/article/pii/S0079661109001414 

Lehodey, P., Senina, I., Sibert, J., Bopp, L., Calmettes, B., Hampton, J and R. Murtugudde. 2010. Preliminary forecasts of Pacific bigeye tuna population trends under the A2 IPCC scenario. Progress in Oceanography. Vol.86, pp 302-315.

Brasseur, P., Gruber, N., Barciela, R., Brander, K., Hobday, A. J., Huret, M., Lehodey, P., Moulin, C., Murtugudde,R., Senina, I., Svendsen, E. and R. Matear. 2009. Integrating biogeochemistry and ecology into ocean data assimilation systems. Oceanography, Vol.22, No.3.

Lehodey P., Senina I., Murtugudde R. (2008). A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) – Modelling of tuna and tuna-like populations. Progress in Oceanography, 78: 304-318. http://www.sciencedirect.com/science/article/pii/S007966110800116X  

Senina I., Sibert J., & Lehodey P. (2008). Parameter estimation for basin-scale ecosystem-linked population models of large pelagic predators: application to skipjack tuna. Progress in Oceanography, 78: 319-335. http://www.sciencedirect.com/science/article/pii/S0079661108001171 

Lehodey P., Chai F., & Hampton J. (2003). Modelling climate-related variability of tuna populations from a coupled ocean-biogeochemical-populations dynamics model. Fisheries Oceanography, 12(4): 483-494 http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2419.2003.00244.x/full 

Lehodey P., (2001). The pelagic ecosystem of the tropical Pacific Ocean: dynamic spatial modelling and biological consequences of ENSO. Progress in Oceanography, 49: 439-468.  http://www.sciencedirect.com/science/article/pii/S0079661101000350 

Bertignac M., Lehodey P., Hampton J., (1998). A spatial population dynamics simulation model of tropical tunas using a habitat index based on environmental parameters. Fisheries Oceanography, 7: 326-334.  http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2419.1998.00065.x/full  

Lehodey P., André J-M., Bertignac M., Hampton J., Stoens A., C. Menkès, L., Memery, Grima N., (1998). Predicting skipjack tuna forage distributions in the Equatorial Pacific using a coupled dynamical bio-geochemical model. Fisheries Oceanography, 7: 317-325. http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2419.1998.00063.x/full 

Sibert, J.R., Hampton, J., Fournier, D.A., Bills, P.J., 1999. An advection–diffusion– reaction model for the estimation of fish movement parameters from tagging data, with application to skipjack tuna (Katsuwonus pelamis). Can. J. Fish. Aquat. Sci. 56, 925–938. http://www.nrcresearchpress.com/doi/abs/10.1139/f99-017 

Senina I., Lehodey P., Kiyofuji H., Masujima M., Hampton J., Smith N., Williams P. (2017) Skipjack Japan Impacts of Recent High Catches of Skipjack on Fisheries on the Margins of the WCPFC Convention Area. 13th Scientific Committee of the western Central Pacific Fisheries Commission, Rarotonga, Cook Islands, 9-17 August 2017. Working Paper WCPFC-SC13-2017/SA-WP-07, 42 pp. https://www.wcpfc.int/node/29520. 

Lehodey P., Senina I., Calmettes B., Dessert M., Nicol S., Hampton J., Smith N., Gorgues T., Aumont O., Lengaigne M., Menkes C., Gehlen M. (2017). Modelling the impact of climate change including ocean acidification on Pacific yellowfin tuna. 13th Scientific Committee of the western Central Pacific Fisheries Commission, Rarotonga, Cook Islands, 9-17 August 2017. Working Paper WCPFC-SC13-2017/EB-WP-01, 26 pp. https://www.wcpfc.int/node/29559 

Senina I., Lehodey P., Calmettes B., Nicol S., Caillot S., Hampton J. and P. Williams (2016). Predicting skipjack tuna dynamics and effects of climate change using SEAPODYM with fishing and tagging data. WCPFC, 12th Regular Session of the Scientific Committee, Bali, Indonesia 3–11 August 2016, WCPFC-SC12-2016/EB WP-01: 71 pp. http://www.wcpfc.int/node/27443 

Senina I., Lehodey P., Calmettes B., Nicol S., Caillot S., Hampton J. and Williams P. (2015). SEAPODYM application for yellowfin tuna in the Pacific Ocean. 11th Regular Session of the scientific committee, Pohnpei, Federated States of Micronesia, 5-13 August 2015, WCPFC-SC11-2015/EB-IP-01: 66 pp. http://www.wcpfc.int/system/files/EB-IP-01%20SEAPODYM%20in%20WCPO.pdf  

Lehodey P., Senina I., Titaud O., Calmettes B., Conchon A., Dragon A-C., Nicol S., Caillot S., Hampton J, Williams P. (2014). Project 62: SEAPODYM applications in WCPO. 10th regular session of the Scientific Steering Committee, 6-14 August 2014, Majuro, Republic of the Marshall islands. WCPFC-SC10-2014/EB-WP-02 Rev 1.  http://www.wcpfc.int/system/files/EB-WP-02%20Rev%201%20SEAPODYM.pdf 

Dragon, A-C, Senina I., Lehodey P.,(2014) Applications of the SEAPODYM model to swordfish in the Pacific and Indian Oceans. 12th Working Party Billfish of the Indian Ocean Tuna Commission. IOTC–2014–WPB12–16 Rev_1: 38 pp. http://www.iotc.org/fr/documents/applications-seapodym-model-swordfish-pacific-and-indian-ocean 

Lehodey P., Senina I., Titaud O., Calmettes B., Nicol S., Hampton J, Caillot S., Williams P. (2013). Project 62: SEAPODYM applications in WCPO. 9th regular session of the Scientific Steering Committee, 6-14 August 2013, Pohnpei, Federated States of Micronesia. WCPFC‐SC9‐2012/EB‐WP‐03 Rev 1.  http://www.wcpfc.int/meetings/2013/9th-regular-session-scientific-committee  

Lehodey P., Senina I., Hampton J., Nicol S., Williams P., Jurado Molina J., Abecassis M., Polovina J. (2012). Project 62: SEAPODYM working progress and applications to Pacific tuna and billfish population and fisheries. 8th regular session of the Scientific Steering Committee, 7-15 August 2012, Busan, Republic of Korea.WCPFC-SC8-2012/EB-IP 06.  http://www.wcpfc.int/system/files/documents/meetings/scientific-committee/8th-regular-session/ 

Lehodey P., Senina I., Calmettes B., Hampton J., Nicol S., Williams P., Jurado Molina J., Ogura M., Kiyofuji H., Okamoto S. (2011). SEAPODYM working progress and applications to Pacific skipjack tuna population and fisheries. 7th regular session of the Scientific Steering Committee, 8-17 August 2011, Pohnpei, Federate States of Micronesia. WCPFC-SC7-2011/EB- WP 06.  http://www.wcpfc.int/meetings/2011/7th-regular-session-scientific-committee 

Sibert J., Senina I., Lehodey P. (2011). Prospects for effective conservation of bigeye tuna stocks in the Western Central Pacific Ocean. 7th regular session of the Scientific Steering Committee, 8-17 August 2011, Pohnpei, Federate States of Micronesia. WCPFC-SC7-2011/EB- WP 06.  http://www.wcpfc.int/meetings/2011/7th-regular-session-scientific-committee 

Lehodey P., Senina I., Calmettes B., Abecassis M., Jurado Molina J., Briand K., Hampton J., Polovina J., Williams P., Nicol S. (2010). Project 62: SEAPODYM applications in WCPO – Progress Report. 6th regular session of the Scientific Steering Committee, 10-19 August 2010, Nukualofa, Tonga. WCPFC-SC6-2010/EB- IP 02.  http://www.wcpfc.int/meetings/2010/6th-regular-session-scientific-committee  

Lehodey P., Senina I., (2009). A user manual for SEAPODYM version 2.0: application with data assimilation. Fifth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 10–21 August 2009, Port Vila, Vanuatu, WCPFC-SC5-2009/ EB-IP-13, 82 pp. http://www.wcpfc.int/meetings/2009/5th-regular-session-scientific-committee   

Lehodey P., Senina I., (2009). An update of recent developments and applications of the SEAPODYM model. Fifth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 10–21 August 2009, Port Vila, Vanuatu, WCPFC-SC5-2009/EB-WP-10, 44 pp. http://www.wcpfc.int/meetings/2009/5th-regular-session-scientific-committee  

Lehodey P., Senina I., Sibert J., Hampton J. (2008). SEAPODYM.v2: A Spatial Ecosystem And Population Dynamics Model with parameter optimization providing a new tool for tuna management. Fourth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 11–22 August 2008, Port Moresby, Papua New Guinea. WCPFC-SC4-2008/EB-WP-10: 15 pp.
http://www.wcpfc.int/system/files/documents/meetings/scientific-committee/4th-regular-session/ 

Senina, I., Sibert, J., Lehodey, P., Murtugudde R. 2005. Seapodym on a mixed-resolution spatial scale. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME-WP-2: 22 pp. http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_ME_WP_2.pdf

Lehodey P., (2005a). Reference manual for the Spatial Ecosystem And Populations Dynamics Model SEAPODYM.  First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME IP–1: 54 pp. http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_ME_IP_1.pdf  

Lehodey P., (2005b). Application of SEAPODYM to the Pacific Pelagic Ecosystem. Recent results and perspectives  First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. EB WP–8: 29pp. http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_EB_WP_8.pdf  

Lehodey P., (2005c).  First application of SEAPODYM to Pacific bigeye tuna. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME-WP-1:
http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_ME_WP_1.pdf  

Lehodey P., (2004a). A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) for tuna and associated oceanic top-predator species: Part I – Lower and intermediate trophic components. 17th meeting of the Standing Committee on Tuna and Billfish, Majuro, Republic of Marshall Islands, 9-18 Aug. 2004, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ECO-1:  26 pp.
http://www.spc.int/OceanFish/Html/SCTB/SCTB17/ECO-1.pdf 

Lehodey P., (2004b) A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) for tuna and associated oceanic top-predator species: Part II – Tuna populations and fisheries. 17th meeting of the Standing Committee on Tuna and Billfish, Majuro, Republic of Marshall Islands, 9-18 Aug. 2004, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ECO-2:  36 pp. http://www.spc.int/OceanFish/Html/SCTB/SCTB17/ECO-2.pdf 

Lehodey P., (2003) SEPODYM application to skipjack tuna (Katsuwonus pelamis) in the Pacific Ocean: impact of ENSO on recruitment and population. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: SKJ-5 

Lehodey P., (2003) First application of SEPODYM to yellowfin tuna population and fisheries in the Pacific Ocean. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: YFT-4 

Lehodey P., (2003) SEPODYM application to albacore (Thunnus alalunga) in the Pacific Ocean.  16th  meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ALB-9 http://www.spc.int/DigitalLibrary/Doc/FAME/Meetings/SCTB/16/ALB_9.pdf 

Lehodey P., (2002) SEPODYM development and application to skipjack population and fisheries. 15th  meeting of the Standing Committee on Tuna and Billfish, Honolulu, Hawaii, USA, 22-27 July 2002, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: SKJ-5  

Lehodey, P. (2001). Sepodym skipjack analysis. 14th Standing Committee on Tuna and Billfish, Noumea, 9-16 August 2000, Secretariat of the Pacific Community, Noumea, Working Paper SKJ-2: 24 pp. http://www.spc.int/DigitalLibrary/Doc/FAME/Meetings/SCTB/14/SKJ_2.pdf  

Lehodey, P. 2000. Update on the Spatial Environmental Population Dynamics Model: SEPODYM. 13th Standing Committee on Tuna and Billfish, Noumea, 5-12 July 2000, Secretariat of the Pacific Community, Noumea, Working Paper RG-2: 6 pp. http://www.spc.int/DigitalLibrary/Doc/FAME/Meetings/SCTB/13/RG_2.pdf 

Lehodey P. 2000. An application of a Spatial Environmental Population Dynamics Model (SEPODYM) to skipjack [SKJ_3]. Noumea, New Caledonia: SPC, Secretariat of the Pacific Community. Standing Committee on Tuna and Billfish, Noumea, New Caledonia, 5-12 July 2000, 13th. 12 p. 

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